Index

_

__mapper_args__ (exam-manager.app.db.postgres.AcquisitionTask attribute) (exam-manager.app.db.postgres.DAGTask attribute) (exam-manager.app.db.postgres.Task attribute) __table_args__ (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Result attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute)

__tablename__ (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.AcquisitionTask attribute) (exam-manager.app.db.postgres.DAGTask attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Result attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) _pick_result_type() (in module device-manager.app.api.device_websocket)

A

acquisition_limits (exam-manager.app.db.postgres.AcquisitionTask attribute) acquisition_parameter (exam-manager.app.db.postgres.AcquisitionTask attribute) AcquisitionTask (class in exam-manager.app.db.postgres) add_blank_result_db() (in module exam-manager.app.dal.result_dal) add_exam_data() (in module exam-manager.app.dal.exam_dal)

add_task_data() (in module exam-manager.app.dal.task_dal) add_workflow_data() (in module exam-manager.app.dal.workflow_dal) app (in module device-manager.app.main) (in module exam-manager.app.main) (in module workflow-manager.app.main)

B

Base (class in exam-manager.app.db.postgres) (in module device-manager.app.api.db)

build_index_meta() (in module exam-manager.app.tools.mrd_provider)

C

callback_results_ready() (in module workflow-manager.app.api.manager_endpoints) client (exam-manager.app.db.mongodb.Database attribute) close_mongo_connection() (in module exam-manager.app.db.mongodb) collection (exam-manager.app.db.mongodb.Database attribute) comment (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Workflow attribute) connect_to_mongo() (in module exam-manager.app.db.mongodb) connection_with_valid_id_and_token() (in module device-manager.app.api.device_websocket) create_blank_result() (in module device-manager.app.api.exam_requests) (in module exam-manager.app.api.result_api) (in module workflow-manager.app.api.scanhub_requests) create_device() (in module device-manager.app.api.device_endpoints)

create_exam() (in module exam-manager.app.api.exam_api) create_exam_from_template() (in module exam-manager.app.api.exam_api) create_mri_sequence() (in module exam-manager.app.api.mri_sequence_api) create_task() (in module exam-manager.app.api.task_api) create_task_from_template() (in module exam-manager.app.api.task_api) create_workflow() (in module exam-manager.app.api.workflow_api) create_workflow_from_template() (in module exam-manager.app.api.workflow_api) creator (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) custom_http_exception_handler() (in module device-manager.app.main) (in module exam-manager.app.main)

D

dag_id (exam-manager.app.db.postgres.DAGTask attribute) dag_type (exam-manager.app.db.postgres.DAGTask attribute) DAGSTER_URL (in module workflow-manager.app.api.dagster_queries) DAGTask (class in exam-manager.app.db.postgres) dal_create_device() (in module device-manager.app.api.dal) dal_delete_device() (in module device-manager.app.api.dal) dal_get_all_devices() (in module device-manager.app.api.dal) dal_get_device() (in module device-manager.app.api.dal) dal_update_device() (in module device-manager.app.api.dal) DATA_LAKE_DIR (in module device-manager.app.api.device_websocket) (in module exam-manager.app.tools.dicom_provider) (in module exam-manager.app.tools.mrd_provider) (in module workflow-manager.app.api.manager_endpoints) Database (class in exam-manager.app.db.mongodb) datetime_created (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Result attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) datetime_updated (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) db (in module exam-manager.app.db.mongodb) delete_blank_result() (in module device-manager.app.api.exam_requests) delete_device() (in module device-manager.app.api.device_endpoints) delete_exam_data() (in module exam-manager.app.dal.exam_dal) delete_mri_sequence_endpoint() (in module exam-manager.app.api.mri_sequence_api) delete_result() (in module exam-manager.app.api.result_api) (in module workflow-manager.app.api.scanhub_requests) delete_result_db() (in module exam-manager.app.dal.result_dal) delete_task() (in module exam-manager.app.api.task_api) delete_task_data() (in module exam-manager.app.dal.task_dal) delete_workflow() (in module exam-manager.app.api.workflow_api)

delete_workflow_data() (in module exam-manager.app.dal.workflow_dal) description (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) destination (exam-manager.app.db.postgres.Task attribute) Device (class in device-manager.app.api.db) (in module exam-manager.app.db.postgres) device-manager module device-manager.app module device-manager.app.api module device-manager.app.api.dal module device-manager.app.api.db module device-manager.app.api.device_endpoints module device-manager.app.api.device_websocket module device-manager.app.api.exam_requests module device-manager.app.main module device_id (exam-manager.app.db.postgres.AcquisitionTask attribute) DEVICE_MANAGER_URI (in module workflow-manager.app.api.manager_endpoints) device_name (device-manager.app.api.db.Device attribute) dg_client (in module workflow-manager.app.api.manager_endpoints) DICOM_BASE_URI (in module workflow-manager.app.api.manager_endpoints) dict_id_parameters (in module device-manager.app.api.device_websocket) dict_id_websocket (in module device-manager.app.api.device_websocket) directory (exam-manager.app.db.postgres.Result attribute)

E

Exam (class in exam-manager.app.db.postgres) exam-manager module exam-manager.app module exam-manager.app.api module exam-manager.app.api.exam_api module exam-manager.app.api.mri_sequence_api module exam-manager.app.api.result_api module exam-manager.app.api.task_api module exam-manager.app.api.workflow_api module exam-manager.app.dal module exam-manager.app.dal.exam_dal module exam-manager.app.dal.result_dal module exam-manager.app.dal.task_dal module

exam-manager.app.dal.workflow_dal module exam-manager.app.db module exam-manager.app.db.mongodb module exam-manager.app.db.postgres module exam-manager.app.main module exam-manager.app.tools module exam-manager.app.tools.dicom_provider module exam-manager.app.tools.helper module exam-manager.app.tools.mrd_provider module exam-manager.app.tools.mri_sequence_plot module exam_delete() (in module exam-manager.app.api.exam_api) exam_id (exam-manager.app.db.postgres.Workflow attribute) EXAM_MANAGER_URI (in module workflow-manager.app.api.manager_endpoints) exam_router (in module exam-manager.app.api.exam_api)

F

files (exam-manager.app.db.postgres.Result attribute)

G

generate_plotly_figure() (in module exam-manager.app.tools.mri_sequence_plot) get_all_exam_data() (in module exam-manager.app.dal.exam_dal) get_all_exam_template_data() (in module exam-manager.app.dal.exam_dal) get_all_exam_templates() (in module exam-manager.app.api.exam_api) get_all_exam_workflows() (in module exam-manager.app.api.workflow_api) get_all_mri_sequences() (in module exam-manager.app.api.mri_sequence_api) get_all_patient_exams() (in module exam-manager.app.api.exam_api) get_all_results_db() (in module exam-manager.app.dal.result_dal) get_all_task_data() (in module exam-manager.app.dal.task_dal) get_all_task_results() (in module exam-manager.app.api.result_api) get_all_task_template_data() (in module exam-manager.app.dal.task_dal) get_all_task_templates() (in module exam-manager.app.api.task_api) get_all_workflow_data() (in module exam-manager.app.dal.workflow_dal) get_all_workflow_tasks() (in module exam-manager.app.api.task_api) get_all_workflow_templates() (in module exam-manager.app.api.workflow_api) get_all_workflows_template_data() (in module exam-manager.app.dal.workflow_dal) get_device() (in module device-manager.app.api.device_endpoints) get_devices() (in module device-manager.app.api.device_endpoints) get_dicom() (in module exam-manager.app.api.result_api) get_exam() (in module exam-manager.app.api.exam_api) get_exam_data() (in module exam-manager.app.dal.exam_dal)

get_exam_id() (in module workflow-manager.app.api.scanhub_requests) get_exam_out_model() (in module exam-manager.app.tools.helper) get_meta() (in module exam-manager.app.api.result_api) get_mongo_database() (in module exam-manager.app.db.mongodb) get_mrd_binary() (in module exam-manager.app.api.result_api) get_mri_sequence_by_id() (in module exam-manager.app.api.mri_sequence_api) get_mri_sequence_file_by_id() (in module exam-manager.app.api.mri_sequence_api) get_mri_sequence_header_file_by_id() (in module exam-manager.app.api.mri_sequence_api) get_result() (in module exam-manager.app.api.result_api) (in module workflow-manager.app.api.scanhub_requests) get_result_db() (in module exam-manager.app.dal.result_dal) get_sequence() (in module device-manager.app.api.exam_requests) get_sequence_plot() (in module exam-manager.app.tools.mri_sequence_plot) get_task() (in module device-manager.app.api.exam_requests) (in module exam-manager.app.api.task_api) (in module workflow-manager.app.api.scanhub_requests) get_task_data() (in module exam-manager.app.dal.task_dal) get_task_out() (in module exam-manager.app.tools.helper) get_workflow() (in module exam-manager.app.api.workflow_api) get_workflow_data() (in module exam-manager.app.dal.workflow_dal) get_workflow_out_model() (in module exam-manager.app.tools.helper)

H

handle_acquisition_task_trigger() (in module workflow-manager.app.api.manager_endpoints) handle_dag_task_trigger() (in module workflow-manager.app.api.manager_endpoints)

handle_file_transfer() (in module device-manager.app.api.device_websocket) handle_register() (in module device-manager.app.api.device_websocket) handle_status_update() (in module device-manager.app.api.device_websocket)

I

id (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.AcquisitionTask attribute) (exam-manager.app.db.postgres.DAGTask attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Result attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute)

indication (exam-manager.app.db.postgres.Exam attribute) init_db() (in module device-manager.app.api.db) (in module exam-manager.app.db.postgres) input_task_ids (exam-manager.app.db.postgres.DAGTask attribute) is_template (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute)

L

lifespan() (in module device-manager.app.main) (in module exam-manager.app.main) list_available_tasks() (in module workflow-manager.app.api.manager_endpoints) list_dagster_jobs() (in module workflow-manager.app.api.dagster_queries)

load_acquisitions_slices() (in module exam-manager.app.tools.mrd_provider) locate_mrd() (in module exam-manager.app.tools.mrd_provider) LOG_CALL_DELIMITER (in module device-manager.app.api.device_endpoints) (in module device-manager.app.api.device_websocket)

M

manufacturer (device-manager.app.api.db.Device attribute) MappedBase (in module exam-manager.app.db.postgres) meta (exam-manager.app.db.postgres.Result attribute) modality (device-manager.app.api.db.Device attribute) module device-manager device-manager.app device-manager.app.api device-manager.app.api.dal device-manager.app.api.db device-manager.app.api.device_endpoints device-manager.app.api.device_websocket device-manager.app.api.exam_requests device-manager.app.main exam-manager exam-manager.app exam-manager.app.api exam-manager.app.api.exam_api exam-manager.app.api.mri_sequence_api exam-manager.app.api.result_api exam-manager.app.api.task_api exam-manager.app.api.workflow_api exam-manager.app.dal exam-manager.app.dal.exam_dal exam-manager.app.dal.result_dal exam-manager.app.dal.task_dal exam-manager.app.dal.workflow_dal exam-manager.app.db exam-manager.app.db.mongodb exam-manager.app.db.postgres exam-manager.app.main exam-manager.app.tools exam-manager.app.tools.dicom_provider exam-manager.app.tools.helper exam-manager.app.tools.mrd_provider exam-manager.app.tools.mri_sequence_plot workflow-manager workflow-manager.app workflow-manager.app.api workflow-manager.app.api.dagster_queries workflow-manager.app.api.manager_endpoints workflow-manager.app.api.scanhub_requests workflow-manager.app.main

mri_sequence_form() (in module exam-manager.app.api.mri_sequence_api)

N

name (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute) (exam-manager.app.tools.mri_sequence_plot.TraceData attribute)

O

oauth2_scheme (in module device-manager.app.api.device_endpoints) (in module device-manager.app.api.device_websocket) (in module workflow-manager.app.api.manager_endpoints)

origins (in module device-manager.app.main) ORIGINS (in module exam-manager.app.main) (in module workflow-manager.app.main)

P

parameter (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.DAGTask attribute) parse_ids() (in module exam-manager.app.tools.mrd_provider) parse_job_id() (in module workflow-manager.app.api.dagster_queries) patient_height_cm (exam-manager.app.db.postgres.Exam attribute) patient_id (exam-manager.app.db.postgres.Exam attribute) PATIENT_MANAGER_URI (in module workflow-manager.app.api.manager_endpoints) patient_weight_kg (exam-manager.app.db.postgres.Exam attribute) postgres_db_name_filepath (in module device-manager.app.api.db) (in module exam-manager.app.db.postgres)

postgres_password_filepath (in module device-manager.app.api.db) (in module exam-manager.app.db.postgres) postgres_user (in module device-manager.app.api.db) (in module exam-manager.app.db.postgres) postgres_user_filepath (in module device-manager.app.api.db) (in module exam-manager.app.db.postgres) PREFIX_PATIENT_MANAGER (in module exam-manager.app.api.exam_api) progress (exam-manager.app.db.postgres.Task attribute) provide_p10_dicom() (in module exam-manager.app.tools.dicom_provider)

R

RANGE_RE (in module exam-manager.app.tools.mrd_provider) readiness() (in module device-manager.app.main) (in module exam-manager.app.main) (in module workflow-manager.app.main) resolve_dicom_path() (in module exam-manager.app.tools.dicom_provider) Result (class in exam-manager.app.db.postgres)

result_router (in module exam-manager.app.api.result_api) RESULT_URI (in module device-manager.app.api.exam_requests) (in module workflow-manager.app.api.scanhub_requests) results (exam-manager.app.db.postgres.Task attribute) router (in module device-manager.app.api.device_endpoints) (in module device-manager.app.api.device_websocket) (in module workflow-manager.app.api.manager_endpoints)

S

salt (device-manager.app.api.db.Device attribute) seq_router (in module exam-manager.app.api.mri_sequence_api) sequence_id (exam-manager.app.db.postgres.AcquisitionTask attribute) SEQUENCE_URI (in module device-manager.app.api.exam_requests) serial_number (device-manager.app.api.db.Device attribute) set_result() (in module device-manager.app.api.exam_requests) (in module exam-manager.app.api.result_api) (in module workflow-manager.app.api.scanhub_requests) set_task() (in module device-manager.app.api.exam_requests) (in module workflow-manager.app.api.scanhub_requests)

shutdown() (in module workflow-manager.app.main) site (device-manager.app.api.db.Device attribute) start_scan_via_websocket() (in module device-manager.app.api.device_websocket) startup() (in module workflow-manager.app.main) status (device-manager.app.api.db.Device attribute) (exam-manager.app.db.postgres.Exam attribute) (exam-manager.app.db.postgres.Task attribute) (exam-manager.app.db.postgres.Workflow attribute)

T

Task (class in exam-manager.app.db.postgres) task_id (exam-manager.app.db.postgres.Result attribute) task_router (in module exam-manager.app.api.task_api) task_type (exam-manager.app.db.postgres.Task attribute) TASK_URI (in module device-manager.app.api.exam_requests) (in module workflow-manager.app.api.scanhub_requests)

tasks (exam-manager.app.db.postgres.Workflow attribute) token_hash (device-manager.app.api.db.Device attribute) TraceData (class in exam-manager.app.tools.mri_sequence_plot) trigger_task() (in module workflow-manager.app.api.manager_endpoints) type (exam-manager.app.db.postgres.Result attribute)

U

update() (device-manager.app.api.db.Device method) (exam-manager.app.db.postgres.Base method) update_device_parameter() (in module device-manager.app.api.device_endpoints) update_exam() (in module exam-manager.app.api.exam_api) update_exam_data() (in module exam-manager.app.dal.exam_dal)

update_mri_sequence_endpoint() (in module exam-manager.app.api.mri_sequence_api) update_result_db() (in module exam-manager.app.dal.result_dal) update_task() (in module exam-manager.app.api.task_api) update_task_data() (in module exam-manager.app.dal.task_dal) update_workflow() (in module exam-manager.app.api.workflow_api) update_workflow_data() (in module exam-manager.app.dal.workflow_dal)

V

validation_exception_handler() (in module device-manager.app.main) (in module exam-manager.app.main)

W

websocket_endpoint() (in module device-manager.app.api.device_websocket) Workflow (class in exam-manager.app.db.postgres) workflow-manager module workflow-manager.app module workflow-manager.app.api module workflow-manager.app.api.dagster_queries module

workflow-manager.app.api.manager_endpoints module workflow-manager.app.api.scanhub_requests module workflow-manager.app.main module workflow_id (exam-manager.app.db.postgres.Task attribute) WORKFLOW_MANAGER_URI (in module workflow-manager.app.api.manager_endpoints) workflow_router (in module exam-manager.app.api.workflow_api) WORKFLOW_URI (in module workflow-manager.app.api.scanhub_requests) workflows (exam-manager.app.db.postgres.Exam attribute)

X

x (exam-manager.app.tools.mri_sequence_plot.TraceData attribute)

Y

y (exam-manager.app.tools.mri_sequence_plot.TraceData attribute)